PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G226700.2
Common NameB456_005G226700, LOC105795126
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 394aa    MW: 44211.1 Da    PI: 9.4673
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G226700.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.00058356375120
                         EEETTTTEEESSHHHHHHHH CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                         ++C +C+ ++ r+++L++H+
  Gorai.005G226700.2 356 FRCAICNITCGRSEDLNSHL 375
                         89*****************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031342.9E-2227103IPR004345TB2/DP1/HVA22-related protein
SuperFamilySSF576678.25E-11205249No hitNo description
SMARTSM004512.1E-4216250IPR003604Zinc finger, U1-type
PfamPF128746.2E-10219243No hitNo description
SMARTSM003550.44219243IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.7E-7345385No hitNo description
SMARTSM004510.004353387IPR003604Zinc finger, U1-type
PfamPF128742.3E-4356380No hitNo description
SMARTSM0035510356380IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280358380IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MGFQALVNLA LICFHSLAWP LFALGYPLRA SIQAIEANSN TDTKKLVTYW IIFSLISLFE  60
HAFMGILQWL PFWPYMKLTI VCWMMIPHFD GAFYVYNHFV HPCLYMDLPT IINWFKKQQD  120
LFLKDNFLVE VADDFVKAHG PTEVQEKLIA NEGTETSILQ KGIKPVQIAE KSEVAPILKT  180
DPNVIQTVNN TTVTLSETVG EVGPDLPKIS SDKQVQKEWT CAMCQVTTTS EKTLKSHLQG  240
RKHKNKLMQA NNQPCKGKAG LASKVKQSEV SRKEPQKKGS KNYEPPKGQM SASSAACSNA  300
VNPKTEMSKS NLPKEEWKKV IPTTNMVGNH VKSSENVQGQ QQQVEKEHNK TKIPQFRCAI  360
CNITCGRSED LNSHLWGRKH LAKLNSLGRG QLA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012480068.10.0PREDICTED: uncharacterized protein LOC105795126 isoform X2
TrEMBLA0A0D2RRM60.0A0A0D2RRM6_G
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]